cb8124f699* Provide uncertainty of both a and b fit parameters.
Wirawan Purwanto
2012-10-15 16:12:37 -04:00
87763d6e57* wpylib.math.fitting.linear: for linear fit methods. First method: linregr2d_SZ() from Shiwei's email in 2006.
Wirawan Purwanto
2012-10-15 16:02:41 -04:00
908a4e0682* Rebase fit_result on result_base.
Wirawan Purwanto
2012-10-15 16:01:46 -04:00
348c204699* Change wpylib.math.fitting module from a file into a subdirectory.
Wirawan Purwanto
2012-10-15 15:16:02 -04:00
b58ea30ba8* Added a facility to catch exception while capturing stdout, and deliver the output printed so far (to stderr), plus re-raising the exception.
Wirawan Purwanto
2012-08-24 16:31:48 -04:00
f677dc1a81* Added wpylib.py.stdout_capture as a hack tool to capture sys.stdout output of a given function call (and its child subroutines).
Wirawan Purwanto
2012-08-10 10:13:18 -04:00
17d242213d* Added some useful functions from my pw2g_bench_MnO.py scriptlet collection:
Wirawan Purwanto
2012-07-25 09:40:37 -04:00
7ebb4004dc* str_igrep(): use enumerate function.
Wirawan Purwanto
2012-06-13 19:36:35 -04:00
d70bcf2149* In text_output methods, do the required action iff self.out is not None.
Wirawan Purwanto
2012-06-13 19:35:06 -04:00
81316af285* Added os.path-like methods: isdir, isfile, islink. The last one is not reliable, but is added for uniformity for the time being.
Wirawan Purwanto
2012-06-03 20:35:40 -04:00
6433e5da3c* Added prefix and suffix options for matrix_str and vector_str.
Wirawan Purwanto
2012-05-23 00:25:42 -04:00
140b3b699c* Added wpylib.interactive_tools.printstr class to facilitate logging of print-ed output in interactive python sessions.
Wirawan Purwanto
2012-05-17 12:29:30 -04:00
5c72506135* New module: wpylib.file.tee * Added class tee_output for splitting text output to multiple destinations.
Wirawan Purwanto
2012-05-14 15:48:43 -04:00
ad841e0b90* text_input.read_items(): added option end_line_match' and last_line_match' (mutually exclusive options) to allow the dataset reading to end upon encountering certain text pattern (or a more complicated match, if we specify a function for the option value). These options can be used to work with the `maxcount' option; the shortest of the two (maxcount records read first, or end/last_line_match finds a match) will end the reading of the dataset.
Wirawan Purwanto
2012-04-17 11:03:29 -04:00
501552a65a* Added zip_gen() to simulate the effect of built-in zip() function, but implemented as a generator rather than yielding the list right away. This is used mainly in loops, where we don't want to generate all the elements due to memory concerns.
Wirawan Purwanto
2012-04-17 11:00:30 -04:00
606214eb66* Changing all isinstance(STUFF, str)' to isinstance(STUFF, basestring)' for future-proofing this code.
Wirawan Purwanto
2012-04-13 17:10:32 -04:00
6656d3d5e3* In module text_input: Added head() and tail() to emulate the basic behavior of UNIX commands with the same name. Output lines are already split into a list of strings.
Wirawan Purwanto
2012-03-19 16:53:23 -04:00
14303979f1* Recorded down some notes/caveat for init_interactive().
Wirawan Purwanto
2012-02-16 13:53:58 -05:00
4194344891* init_interactive() returns True if interactive session is detected; False otherwise.
Wirawan Purwanto
2012-02-16 13:45:46 -05:00
1674bfd256* Added workaround so at least interactive python detection works (although not perfectly) in python <= 2.5.
Wirawan Purwanto
2012-02-16 13:32:55 -05:00
5666280a45* Alias "|" operator to "+" operator.
Wirawan Purwanto
2012-02-09 15:02:38 -05:00
3698671bed* Added: fortran_bin_file.peek_next_rec_len() to fetch the next record length while not advancing the read pointer to that record yet.
Wirawan Purwanto
2012-01-30 16:04:17 -05:00
050e2414ef* Added faster LDdec1 for 1-based indexing. Tested through N=1000.
Wirawan Purwanto
2012-01-26 10:46:55 -05:00
d04ea8cbea* Completing jskip formula for LD that is analogous to the jskip formula for UD matrix format.
Wirawan Purwanto
2012-01-25 17:07:50 -05:00
93a89d2606* Created array indexer for "upper diagonal" indexing mode. Apparently I was able to create the non-iterative version of UDdec (1-based indices).
Wirawan Purwanto
2012-01-24 17:32:39 -05:00
961a802326* Keep a copy of my symmetric array indexer worksheet in GIT.
Wirawan Purwanto
2012-01-24 17:28:10 -05:00
7017fdc6af* Committing all dirty work to CVS. We are migrating to GIT. Beware: changes in this commit may or may not work properly.
wirawan
2011-10-06 19:15:05 +00:00
8ebf1e422e* Add important warning. Maybe in the future we need to use operator "|" and append the search paths to _list_?
wirawan
2011-09-19 20:06:45 +00:00
81e2ada60c* Allow comment character to be changed from "#" using the instance.comment_char attribute.
wirawan
2011-09-16 21:21:23 +00:00
3f38cbfb34* Allow printing of numpy.matrix objects.
wirawan
2011-09-13 21:50:16 +00:00
aad559d86b* Class Parameters: important change of behavior for more safety to avoid potential confusion.
wirawan
2011-09-09 18:58:48 +00:00
4aff740f55* Parameters value lookup: use try..except EAFP rather LBYL approach. * Add simple checks for _p, _opts_ default arguments in case they are not indexable/dict-like objects. This is needed to avoid bizzare error messages later then the Parameters object is in use.
wirawan
2011-09-07 15:05:54 +00:00
77a15740cb* New module wpylib.debugging: Debugging tools.
wirawan
2011-08-31 18:25:07 +00:00
16c24736e4* ipython-interactive-script.PY: skeleton for my ipython interactive script.
wirawan
2011-08-19 17:23:10 +00:00
1e3d236b1c* Completing initial version of interactive tool support: added interactive mode detection (plain python, `python -i', and ipython supported), and my canned initialization for interactive python environment (like MYSELF, ARGV).
wirawan
2011-07-18 15:48:52 +00:00
47f6bced79* wpylib.math.linalg: Added initial module for linear-algebra convenience functions, objects, and submodules.
wirawan
2011-07-14 19:00:59 +00:00
94c1651586* wpylib.py.im_weakref: weakref for instance method. Copied from Linux Screen Reader project.
wirawan
2011-06-08 15:50:07 +00:00
424a9238bb* hacks.py: Added make_unbound_method to allow general function to participate as hacked class methods.
wirawan
2011-06-08 15:49:04 +00:00
ceb8f35ec3* Creating wpylib.py module to contain all python-level hacks. Submodules are available for specialized and more complicated hacks.
wirawan
2011-06-08 15:29:14 +00:00
ad73b5af7f* Added set_next_proc() method to set which procedure should be called when "next()" method dispatcher is called.
wirawan
2011-06-03 21:34:32 +00:00
1bbaae135f* Added python-level advanced hack module which should hide all my dirty tricks here.
wirawan
2011-06-03 21:31:59 +00:00
90c4f1b50b* Added vector_str and matrix_str generic function to print a matrix/vector in space-seprated string format. The output is mainly for human consumption, not for machine re-reading (although it is possible to do so, in general).
wirawan
2011-06-03 18:24:00 +00:00
9e1c6f5868* Commenting out the verbose printout. I think the module is robust now.
wirawan
2011-05-12 14:51:02 +00:00
90f1603499* Added text_output as a converse facility to print out text stream to a file. Useful for a shortened output statements in the code, and also for reroutable output (to stdout? to file? to both?) and flexible output kind.
wirawan
2011-05-11 20:28:51 +00:00
0531e4e511* Add documentation for file_table. Add note for future hash: SHA1,256,...
wirawan
2011-04-26 15:28:37 +00:00
f42f2d82fa* __imul__ and __idiv__ should return the lvalue object itself.
wirawan
2011-04-05 19:20:55 +00:00
f64a3cfd8e* Using external login node on jaguar.
wirawan
2011-03-10 20:18:27 +00:00
6181d5588d* The sign of the scalar prefactor should not enter the uncertainty (err) field!
wirawan
2011-03-10 20:17:55 +00:00
2a30c20a79* Added dict_islice to support slicing while ignoring non-existing keys in the source dict.
wirawan
2011-03-10 20:16:58 +00:00
26db0806ae* Make Struct available publicly in wpylib.params namespace (with the 'struct' name).
wirawan
2011-03-10 19:22:37 +00:00
3ac8e37b35* Using the __dict__ attribute to store user-defined values. Dict-like behavior is exemplified by this class although it is *not* derived from a dict.
wirawan
2011-03-10 19:21:33 +00:00
6d043f6721* Simple clarification on example.
wirawan
2011-03-10 19:20:35 +00:00
d8984cf032* Introducing "Struct", the base class for all structured datatypes. This is the original implementation as found in Ca+4H2_Hstorage_iter.py .
wirawan
2011-03-10 17:17:48 +00:00
dbd36e0f1f* Added division of errorbar by a scalar.
wirawan
2010-12-01 17:11:46 +00:00
7dbef49f6c* Minor documentation edit.
wirawan
2010-11-11 18:00:01 +00:00
8363eb03bc* Adding more extensive documentation. * Making minor changes to the expected method name (parse_text_file_ => parse_file_).
wirawan
2010-11-11 17:59:36 +00:00
0bd6f56422* Moving pyqmc.results.result_base module to wpylib.db.result_base for more general uses.
wirawan
2010-11-11 17:48:01 +00:00
bceef1e601* Adding more methods for fitting: fmin (simplex minimization). I still have hard time making fitting routine work for me. But at least this one works for simple SHO fitting.
wirawan
2010-11-05 02:28:20 +00:00
428b481b87* Added initial support for errorbar object, which includes compression-to-string (ad hoc implementation is written in C++ with the help of my cp.inc library, unfortunately).
wirawan
2010-10-19 20:19:25 +00:00
9eb177bc27* Adding wpylib.math.stats submodule which contains commonly used statistical analysis tools.
wirawan
2010-10-07 15:57:29 +00:00
02776c1e6a* Moving pyqmc.stats.avg to wpylib.math.stats.avg .
wirawan
2010-10-07 15:56:55 +00:00
96d1f9afd7* Upgrade to allow reading complex-valued data directly. Please see the documentation of text_input.read_items for more detail.
wirawan
2010-09-30 17:23:34 +00:00
71474e2973* Standard python ignore.
wirawan
2010-09-30 16:17:00 +00:00
6641410d89* Moving the fancy "Parameters" parameter lookup class to its own module. From now on, use it as wpylib.params.flat class.
wirawan
2010-09-30 16:16:38 +00:00
cae9cabdea* Simple text input reader. Imported from pyqmc.utils.text_input .
wirawan
2010-09-27 19:54:05 +00:00
5f367c8fc8* My own update scripts.
wirawan
2010-09-27 19:53:22 +00:00
090d9f7b00* Moving pyqmc.utils.file_utils to wpylib project.
wirawan
2010-09-27 19:47:19 +00:00
631a152b8e* Moving pyqmc.utils.timer to wpylib.
wirawan
2010-09-27 19:41:15 +00:00
5392a71943* Correcting minor mistake.
wirawan
2010-09-27 19:40:40 +00:00
f1b8746147* Updating Parameters class: now based on dict. * Can add two Parameters together, which means joining the two or more dicts, much like what function dict_join does.
wirawan
2010-09-10 21:24:56 +00:00
379e83fdec* Added epsilon() function to find out the granuality of a given floating point type.
wirawan
2010-09-10 21:23:59 +00:00
fcba27ae24* Added list_join, much like dict_join, except for list. * Added ranges "magic" object to define piecewise ranges.
wirawan
2010-08-12 19:35:55 +00:00
Wirawan Purwanto